chr11:122152479:A>G Detail (hg38)

Information

Genome

Assembly Position
hg19 chr11:122,023,187-122,023,187 View the variant detail on this assembly version.
hg38 chr11:122,152,479-122,152,479

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.468
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Malignant tumor of cervix We did not detect any association of the other two SNPs in pri-miR-26a-1 (rs7372... BeFree 24380734 Detail
<0.001 cervix carcinoma We did not detect any association of the other two SNPs in pri-miR-26a-1 (rs7372... BeFree 24380734 Detail
Annotation

Annotations

DescrptionSourceLinks
We did not detect any association of the other two SNPs in pri-miR-26a-1 (rs7372209) and pri-miR-100... DisGeNET Detail
We did not detect any association of the other two SNPs in pri-miR-26a-1 (rs7372209) and pri-miR-100... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs1834306 dbSNP
Genome
hg38
Position
chr11:122,152,479-122,152,479
Variant Type
snv
Reference Allele
A
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs1834306
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.4682
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7846
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16758
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